Our 2nd database release of 2017 was published on 23rd March 2017. It now includes 15019 interactions between 2809 targets and 8832 ligands. For full release statistics see the About the Guide to PHARMACOLOGY page. Target updates The major part…
The latest ‘state of the field’ IUPHAR reviews are out in the British Journal of Pharmacology: Karnik SS, Khuraijam D, Tirupula K, Unal H. (2017) Significance of Ang(1-7) coupling with MAS1 and other GPCRs to the Renin-Angiotensin System: IUPHAR Review…
Despite a flurry of mammalian ATP binding cassette (ABC) transporter structures in the last 2 years the Holy Grail has still been to determine how these diverse proteins interact with their transport substrates. Jue Chen and colleagues at the Rockefeller…
The 3rd alpha-release (v3.0) of the Guide to IMMUNOPHARMACOLOGY was released on 30th January 2017. This blog post summarises some of the main features of the release and other developments as we moved toward our first public, beta-release in Spring…
We are pleased to announce our first database release of 2017 on 26th Jan 2017. While there are no major updates in this release, it includes several bug fixes and new ligands of relevance to immunopharmacology. Our new portal, the…
NC-IUPHAR has just published its 100th review in Pharmacological Reviews
GPR139 is an orphan class A G protein-coupled receptor found mainly in the central nervous system. It has its highest expression in the striatum and hypothalamus, regions regulating locomotion and metabolism, respectively, and it has therefore been suggested as a…
This year witnessed a tremendous progress in our understanding of the structure-function relationship of voltage-gated Ca2+ channels. This is based on the cryo-electron microscopy structure of the rabbit Cav1.1 Ca2+ channel complex at a nominal resolution of 3.6 Å ([1]…
Our final technical update for 2016 covers our v2.0 alpha-release, presentation at Pharmacology 2016 and future plans.
The number of alternative mRNA splice forms that map to human protein coding loci has increased to the point that nearly all proteins have such associated database records. This gives rise to the paradox that the gene build pipeline from…
During October we have made the first alpha-release (v1.0) of the Guide to IMMUNOPHARMACOLOGY. This blog post summarises some of the main features of the release and work on the documentation. This first release marks an important step towards the…
GtoPdb and its precursor IUPHAR-DB have been capturing the structures of pharmacologically relevant ligands since 2005. The fig.1. snapshot below shows the approved drug section of our eight-category ligand classification As an active collaboration with the PubChem team, we have…
Endothelin is a peptide that acts via two G-protein coupled receptors. ETA mainly causes vasoconstriction. In contrast ETB predominantly acts as a beneficial clearing receptor and by the release of endothelium derived relaxing factors, vasodilatation [1,2]. This paper describes for…
A team including the Gloriam Group at the University of Copenhagen (also the home of GPCRDB) have paper out in Nature Chemistry reporting the first total synthesis of YM-254890 and FR900359 [1] . These are related cyclic depsipeptide natural products that…
Extracellular ATP is able to activate two families of cell-surface receptors, one of which is the ligand-gated ion channel family of P2X receptors. This family of cation channels is distinct from the remainder of the ligand-gated ion channels, as they…
We are pleased to announce our fourth database release of 2016. Version 2016.4 was published on 13th October 2016. The database is available through the Guide to Pharmacology website, download pages and web-services.
By Peter Buneman The database development team encouraged me to write this off-topic blog on data citation, as it may be of interest to people involved with the IUPHAR/BPS Guide to Pharmacology (GtoPdb). It must be almost ten years ago…
We have created a new sister database to the main Guide to PHARMACOLOGY (GtoPdb) – SynPharm, a database of drug-responsive protein sequences. Each sequence in SynPharm is derived from a GtoPdb interaction. In each case we have identified the continuous…
The focus of development in the last month has been on preparing the GtoImmuPdb portal for alpha-release and building landing-pages for process and cell type association lists.
In a recent article in Nature [1], Wu et al. present the cryo-electron microscopy structure of the rabbit Cav1.1 complex at a nominal resolution of 3.6 Å.
Changeux and Christopoulos have recently described in Cell [1] how common mechanisms link the allosteric sites of activation and response within the four major receptor families of ligand- and voltage-gated ion channels, G-protein-coupled receptors, nuclear hormone receptors, and receptor tyrosine kinases. As…
Leck et al. in Nature, describes a tour de force largest scale reference data set of high-quality protein-coding variation generated via the Exome Aggregation Consortium (ExAC)
Manglik et al., writing in Nature, believe they may have found a new form of painkiller that works just as well as morphine but lacks its potentially lethal side effect.
The major developmental extension to GtoImmuPdb has been incorporation of cell type associations and web-app development to display both process and cell type data.
We are pleased to announce our third database release of 2016. Version 2016.3 was published on 21st July 2016. The database is available through the Guide to Pharmacology website, download pages and web-services. In this release, our curators have added comments to all approved…
The key value of our curation is the extraction of chemistry-activity-target data from papers.
Development of the Guide to Immunopharmacology (GtoImmuPdb) continues and this is an update of progress since our last update in February 2016. Since then, the GtoImmuPdb April Meeting was held in Edinburgh, where a detailed update on the status of…
The DrugBank database has just announced (09 May 2016) more restrictive access conditions including user registration. Not unexpectedly, this has prompted discussion on Twitter and elsewhere (e.g. ThinkLab. including some from the DrugBank team). We enjoy long-standing contacts with the…
The latest update of the database, version 2016.2, has been released (30th March 2016). The summary of the main updates is below. Database content in various formats can be downloaded from our download pages and accessed via web services. This…
Technical update from database and curation team behind The Guide to Immunopharmacology
Our total number of curated interactions now stands at 13859. New BLAST tool for sequence-based searching of targets available at http://www.guidetopharmacology.org/blast/.
We are very pleased to announce a new initiative (from 1st Nov 2015) to establish “The Guide to Immunopharmacology: Integration of targets, diseases and therapies into an expert-driven database”. This project will be supported by a 3-year grant awarded to…
The first version of our REST web services is now available for beta testing
We know users find our curated PDB links of high value, particularly where the ligand co-crystalised within the target protein is an activity-mapped approved drug, clinical candidate or key metabolite. The comparative SAR insights these can provide are substantial, especially…
The first release of 2015 includes major updates in several areas. More than 420 new ligands were added.
Update, 12 March. Inspired by the propitious event described below we have taken the opportunity to update all our publication links. This covers not only IUPHAR reviews but also papers arising from the database and additional recent pubublications co-authored by…
We look forward to meeting with database users, collaborators and contacts at the BPS Focused meeting 20th-21st April 2015, Edinburgh. Note that abstracts and registration are still open and bursaries for presenters available. IUPHAR/BPS Guide to Pharmacology Team members have…
Around this time of year there is much interest and comment from the pundits concerning the previous year’s drug approvals. Team member Chris Southan has a history of picking out aspects of the PubChem entries on his own blog and…
As mentioned in various places (including our FAQ) we welcome the downloading of our content in various slices and formats (listed here). Please contact us if you do this, not only out of professional courtesy but also so we can…
The team have surfaced more fruits of our labour in release 2014.3 of GtoPdb (this is now our official acronym for the database). This post will highlight protease expansion during this curation cycle (see page 10 in our newsletter for an introduction to our…
Many of you will have noticed a gradual blurring of the distinction between publications and databases. One manifestation of this is “live linking” where entities within the text of an open access manuscript connect directly to the URL of an…
This is an introduction to resolving bioactive ligands and their protein targets from the literature. It includes their conversion to standardised molecular identifiers so these can be communicated to the Guide to PHARMACOLOGY (GtoPdb) team. (n.b. identifying what is already…
The latest database version (2014.3) was released on 5th November and includes many content updates and new website enhancements. The current release now covers 7220 distinct ligands interacting at 2708 protein targets (see full statistics on our About page). This…
As we approach our 2014.3 release in a few weeks time the curation team are busy adding and updating records. This includes a round of inputs an revisions from our protein family committees and a new FAQ. Just to remind…
A British Pharmacological Society (BPS) focused meeting in association with NC-IUPHAR will take place in Edinburgh in 2015, exploring new pharmacology and its application to drug discovery. This two-day event running from 20th-21st April will include talks by keynote speakers…
The latest edition of our newsletter can be read at the link below: NC-IUPHAR_Newsletter_Summer_2014 Special features covered in this issue include: A detailed profile of the PubChem database contributed by their lead scientist Evan Bolton, with whom we have worked…